with Marc Baaden as co-author
The following list of posters is roughly sorted in reverse chronological order, with the most recent ones listed first. Some of these posters may have been presented at more than one conference. The year usually indicates when the first dissemination took place.
Vignette | Summary and/or Title | Authors | Year |
---|---|---|---|
Study of NOX5 stability by Molecular Dynamics methods | B. Etcheverry, F. Cailliez, A. de la Lande, M. Baaden | 2022 | |
Stability and structure of adaptative molecular self-organized aggregates designed for new artificial channels. This poster discusses the design and simulation of artificial water channels for desalination purposes, focusing on the structure of the channels in lipid membranes and their transport properties. It also explores the stability and scalability of the channels in different conditions. | A. Hardiagon, F. Sterpone, M. Baaden | 2022 | |
Multiscale modeling of the yeast mitofusin Fzo1. This poster discusses multiscale modeling of the yeast mitofusin Fzo1, a key protein involved in mitochondrial fusion, and its structure and function. | R. Versini, A. Brandner, D. De Vecchis, M. Baaden, P. Fuchs, A. Taly | 2022 | |
Design X Bioinformatics. This is a poster designed for our workshop on a community-driven initiative to connect the bioinformatics and design communities. You can read more about this effort here | B. Sommer, M. Baaden, D. Inoue | 2022 | |
60 ans du Laboratoire de Biochimie Théoriqe. This kakemono poster was designed for the 60 years anniversary of my laboratory, the laboratory of theoretical biochemistry in Paris. We had a big celebration in 2019 | Collective lab effort driven by G. Stirnemann | 2019 | |
UnityMol X, une plate-forme logicielle made in France de visualisation moléculaire multi-fonctions et évolutive. UnityMol offers a software framework for efficiently representing biomolecules and adding visualization features. The use of the Unity3D game engine facilitates the prototyping of user interfaces and domain-specific graphics rendering. | X. Martinez, H. Santuz, J. Rodrigues, N. Férey, M. Baaden | 2019 | |
Visualisation interactive pour cerner les structures et interactions (macro)moléculaires | X. Martinez, H. Santuz, M. Baaden et al. | 2018 | |
UnityMol: la Biochimie à Portée de Tous | S. Doutreligne, M. Baaden et al. | 2018 | |
UnityMol: Interactive Scientific Visualization for Integrative Biology | S. Doutreligne, T. Cragnolini, S. Pasquali, P. Derreumaux,M. Baaden | 2018 | |
UnityMol: Simulation et Visualisation Interactive Ă des fins d'Enseignement et de Recherche | S. Doutreligne, C. Gageat, T. Cragnolini, A. Taly, P. Derreumaux, S. Pasquali, M. Baaden | 2018 | |
Borne UnityMol/HiRE-RNA & DocMolecules | S. Doutreligne, M. Baaden et al. | 2018 | |
BioSpring: Modélisation Multi-Echelle par les Réseaux de Ressorts | S. Doutreligne, A.E. Molza, B. Laurent, O. Delalande, N. Férey, P. Derreumaux, M. Baaden | 2017 | |
CPU vs GPU | S. Doutreligne | 2017 | |
Exploration moléculaire du vivant avec un jeu vidéo basé sur UnityMol | S. Doutreligne, P. Derreumaux, M. Baaden | 2016 | |
UnityMol: Simulation et Visualisation Interactive Ă des fins d'Enseignement et de Recherche | S. Doutreligne, P. Derreumaux, M. Baaden | 2016 | |
UnityMol: Visualization with a game engine | Z. Lv, A. Tek, M. Chavent, M. Baaden | 2012 | |
Study of the interaction between general anesthetics and a bacterial homologue to the human nicotinic receptor | B. Laurent, S. Murail, P.-J. Corringer, M. Delarue, M. Baaden | 2012 | |
Insights into Membrane Fusion from Molecular Dynamics Simulations of SNARE Proteins | A. Tek, P.J. Bond, M.S.P. Sansom, M. Baaden | 2012 | |
HyperBalls on GPU: dynamic visualization of molecular structures - Scientific Visualization Accelerated by Graphics Processors | M. Chavent, A. Tek, Z. Lu, M. Piuzzi, B. Laurent, M. Baaden | 2012 | |
Pushing the boundaries of computational biology with interdisciplinary approaches | M. Baaden | 2012 | |
Flowvr-Nano - visualiser, toucher, déformer et assembler des molécules du bout des doigts | M. Baaden & FvNano team | 2012 | |
FvNano - an interactive molecular dynamics platform | M. Piuzzi, A. Tek, M. Baaden, M. Chavent, M. Dreher, B. Raffin, A. Turki, S. Limet, S. Robert, N. FĂ©rey | 2012 | |
bioSpring, an interactive and multi-resolution software for flexible docking and for mechanical exploration of large biomolecular assemblies - methods | N. FĂ©rey, O. Delalande, M. Baaden | 2011 | |
Insights into Membrane Fusion from Molecular Dynamics Simulations of SNARE Proteins | A. Tek, B. Laurent, M. Baaden | 2011 | |
GPU-accelerated molecular visualization using the Unity3D game engine | Z. Lv, M. Chavent, A. Tek, M. Baaden | 2011 | |
UnityMol: game engine-powered GPU-boosted molecular visualization | M. Chavent, A. Tek, Z. Lv, M. Baaden | 2011 | |
FvNano - une plateforme de dynamique moléculaire interactive | M. Piuzzi, A. Tek, M. Chavent, A. Vanel, B. Raffin, A. Turki, S. Limet, S. Robert, N. Férey, M. Baaden | 2011 | |
Conformational dynamics in a nicotinic receptor homologue probed by simulations | H. Nury, F. Poitevin, C. Van Renterghem, B. Laurent, T. Allen, J.-P. Changeux, P.-J. Corringer, M. Delarue, M. Baaden | 2011 | |
Electrostatically-driven fast association and perdeuteration allow detection of transferred cross-relaxation for G protein-coupled receptor ligands with equilibrium dissociation constants in the high-to-low nanomolar range | L. J. Catoire, M. Damian, M. Baaden, E. Guittet, J.-L. Banères | 2011 | |
Etude par simulation de dynamique moléculaire du complexe SNARE inséré entre deux membranes | A. Tek, B. Laurent, M. Baaden | 2010 | |
A Rendering Method for Small Molecules up to Macromolecular Systems: HyperBalls Accelerated by Graphics Processors | M. Chavent, A. Vanel, B. Lévy, B. Raffin, A. Tek, M. Baaden | 2010 | |
Enterobactin could play a role in preparing iron transport by remodeling the water network through FepA | J. Esque, M. Baaden, C. Oguey. | 2010 | |
A Multimodal VR Framework for Interactive Molecular Simulations | A. Tek, B. Laurent, M. Chavent, M. Baaden | 2010 | |
High quality visualisation: from small molecules to macromolecular systems | M. Chavent, A. Tek, A. Vanel, B. Levy, B. Raffin, M. Baaden | 2010 | |
Augmented Dynamics : Enhanced Visualization of Molecular Dynamics Trajectories | A. Tek, B. Laurent, M. Chavent, M. Baaden | 2010 | |
Multi-resolution and multi-physics approach for interactively locating funtionally linked ion binding sites by steering small molecules into electrostatic potential maps using a haptic device | O. Delalande, N. Férey, B. Laurent, M. Guéroult, B. Hartman, M. Baaden | 2010 | |
The Closure Mechanism Of M. Tuberculosis Guanylate Kinase Relates Structural Fluctuations To Enzymatic Function | O. Delalande, S. Sacquin-Mora, M. Baaden | 2009 | |
Towards efficient tools for multiscale modelling of soft matter | N. FĂ©rey, O. Delalande, G. Grasseau, M. Baaden | 2009 | |
FlowVRNano - un laboratoire virtuel pour modéliser les systèmes moléculaires nanoscopiques en biologie et dans les matériaux | N. Férey, O. Delalande, M. Baaden | 2009 | |
Interactive simulations, a great promise for predicting interactions | M. Chavent, O. Delalande, N. Ferey, B. Laurent,A. Tek, M. Baaden | 2009 | |
Using Human Expertise in Protein-Protein Docking: From Biological Knowledge to Interactive Molecular Simulations | M. Chavent, A. Ghoorah, M.-D. Devignes, M. Smail-Tabbone, V. Venkatraman, F. Leclerc, M. Baaden, B. Maigret,D. Ritchie | 2009 | |
Analyse de protéines transmembranaires par polyèdres de Voronoi/Laguerre - les canaux d´eau à travers FepA | J.Esque, M. Baaden, C. Oguey | 2009 | |
FlowVRNano - a virtual laboratory dedicated to interactive simulations of large molecular systems | N. FĂ©rey, O.Delalande, M. Baaden | 2009 | |
New insights on protein/DNA non specific interaction: the DNase I/DNA model | M. Guéroult, J, Abi Ghanem, B, Heddi, M. Lavigne, M. Baaden, B. Hartmann | 2009 | |
Relations entre fluctuations structurales et fonction enzymatique de la guanylate kinase de Mycobacterium Tuberculosis- impact de grands changements conformationnels | O. Delalande, S. Sacquin-Mora, M. Baaden | 2009 | |
FlowVRNano - a virtual laboratory for analysing and controlling the dynamics of molecular structures | N. Férey, O. Delalande, G. Grasseau, M. Baaden | 2008 | |
SNAREs drum up in silico: molecular dynamics simulations of the synaptic fusion complex | M.P. Durrieu, R. Lavery, M. Baaden | 2008 | |
A VR framework for interacting with molecular simulations | N. FĂ©rey, O. Delalande, G. Grasseau, M. Baaden | 2008 | |
MDDriver: an efficient tool for driving Molecular Dynamics simulations | O. Delalande, N. FĂ©rey, G. Grasseau, M. Baaden | 2008 | |
SHAMAN devient FlowVRNano | LBT team | 2008 | |
FlowVRNano: vers un laboratoire virtuel | M. Baaden | 2007 | |
Fusion membranaire in silico | M.P. Durrieu, R. Lavery et M. Baaden | 2007 | |
Probing mechanical properties of molecular motors and fusion proteins | M. Baaden, M.P. Durrieu, E. Levy et R. Lavery | 2006 | |
Computational study of the low density lipoprotein receptor | M. Baaden et R. Lavery | 2006 | |
Simulation par dynamique moléculaire du complexe SNARE synaptique | M.P. Durrieu, M. Baaden et R. Lavery | 2005 | |
Modélisation moléculaire des mutations du récepteur des lipoprotéines de faible densité impliquées dans l'hypercholesterolémie familiale au Maroc | R. Chater, D. Perahia, K.A. Chihab, S. Moussamih, A. Adlouni, M. Baaden, K. Zakrzewska, R. Lavery, M. El Messal et A. Kettani | 2005 | |
On the convergence of the conformational sampling in molecular dynamics simulations of membrane proteins | J.D. Faraldo-GĂłmez, L.R. Forrest, M. Baaden, P.J. Bond, C. Domene, G. Patargias, J. Cuthbertson et M.S.P. Sansom | 2005 | |
Molecular dynamics simulations of outer membrane phospholipase A | M. Baaden, C. Meier et M.S.P. Sansom | 2003 | |
Simulation of outer membrane proteins | M.S.P. Sansom, P. Bond, M. Baaden, J.D. Faraldo-GĂłmez, S. Deol, C. Meier et K. Cox | 2005 | |
Barrels & corks in a computer, modelling bacterial iron transport systems | M. Baaden et M.S.P. Sansom | 2001 | |
Etudes de molécules extractantes en solution: aspects structuraux et mécanistiques des effets de synergie | M. Baaden | 1999 | |
Computer modeling of liquid - liquid ion extraction | M. Baaden, F. Berny, N. Muzet, R. Schurhammer et G. Wipff | 2000 | |
Dependence of isotropic shift averages and nuclear shielding tensors on the internal rotation of the functional group X about the C-X bond in seven simple vinylic derivatives H2C=CH-X | A. Strich, M. Baaden et P. Granger | 1999 | |
Selective extraction of lanthanide cations by tetra-phosphineoxide substituted calix{4}arenes: a molecular dynamics study at a water/chloroform interface | M. Baaden, M. Burgard, D. Matt et G. Wipff | 1999 |